Information for 5-SCCCCTTAGKSAY (Motif 9)

A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C
Reverse Opposite:
C T A G A C G T A T G C G T A C A G T C A C G T C T G A C G T A A C T G A C T G A C T G A C T G A T G C
p-value:1e-11
log p-value:-2.576e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.4 +/- 20.0bp
Average Position of motif in Background42.2 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:SCCCCTTAGKSAY
-BCMATTAG----
 A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----SCCCCTTAGKSAY
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:SCCCCTTAGKSAY
ACCACTTAA----
 A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:SCCCCTTAGKSAY
ACCACTTAA----
 A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-SCCCCTTAGKSAY
TGCCCTGAGGGCA-
 A C G T A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:SCCCCTTAGKSAY-
--SCCTSAGGSCAW
 A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C A C G T
A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----SCCCCTTAGKSAY
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-SCCCCTTAGKSAY-
NTCCCCTCAGGGANT
 A C G T A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C A C G T
G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-SCCCCTTAGKSAY-
NTCGCCTCAGGCAAT
 A C G T A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C A C G T
G C A T C G A T G A T C A T C G G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A G C C T G A C G T A C G A T

PLAG1/MA0163.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:SCCCCTTAGKSAY-
CCCCCTTGGGCCCC
 A T C G A G T C A G T C G T A C A G T C A C G T A G C T C G T A A C T G A C T G A T C G C G T A A G T C A C G T
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C