Information for 6-GAGGGCASAA (Motif 3)

C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
Reverse Opposite:
A C G T A C G T A T G C A C G T A C T G A G T C A T G C A G T C A C G T A G T C
p-value:1e-16
log p-value:-3.797e+01
Information Content per bp:1.878
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif74.5
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets54.4 +/- 24.6bp
Average Position of motif in Background49.9 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCASAA
TNNGGGCAG--
 A C G T C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCASAA
TRAGGTCA---
 A C G T C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCASAA
CAAAGGTCAG--
 A C G T A C G T C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCASAA
NGTGGGCAT--
 A C G T C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCASAA---
ARGAGGMCAAAATGW
 A C G T A C G T C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGGGCASAA
AAGGTCAC--
 C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GAGGGCASAA--
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCASAA
AGRGGTCA---
 A C G T C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCASAA
TCAAGGTCAN--
 A C G T A C G T C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGGGCASAA
-AGGTCA---
 C T A G C G T A A C T G A T C G A C T G A G T C C G T A A T C G G T C A C G T A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T