Information for 6-HATTCAGGACAGTGGC (Motif 8)

G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G G T A C G T A C C G T A T G A C A C G T A C T G A C G T A T G C A G T C A G C T A C T G G T C A C T G A A C G T C G A T
p-value:1e-9
log p-value:-2.161e+01
Information Content per bp:1.791
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 22.1bp
Average Position of motif in Background21.8 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:HATTCAGGACAGTGGC-------
--TTCAGCACCATGGACAGCGCC
 G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:HATTCAGGACAGTGGC-------
---TCAGCACCATGGACAGCTCC
 G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:HATTCAGGACAGTGGC--
----NAGGTCANTGACCT
 G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

MAFK/MA0496.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--HATTCAGGACAGTGGC
CTGAGTCAGCAATTT---
 A C G T A C G T G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:HATTCAGGACAGTGGC
-NGTCAGCANTTT---
 G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C
A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---HATTCAGGACAGTGGC
NCTANGTCAGCAAATTT--
 A C G T A C G T A C G T G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:HATTCAGGACAGTGGC
-----AAAACAATGG-
 G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:HATTCAGGACAGTGGC----
----ATGTACAGTAGCAAAG
 G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:HATTCAGGACAGTGGC
------GAACAATGGN
 G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0050.1_Osr1_1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:HATTCAGGACAGTGGC----
----ATTTACAGTAGCAAAA
 G C T A T G C A A G C T A C G T A G T C C T G A A C T G A T C G C G T A A G T C G T C A A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A