Information for 5-GVTCWTTCAA (Motif 5)

A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A
Reverse Opposite:
G C A T A C G T A C T G G T C A C G T A C G A T T C A G T C G A A C T G A G T C
p-value:1e-10
log p-value:-2.337e+01
Information Content per bp:1.661
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif8.01%
Number of Background Sequences with motif1588.1
Percentage of Background Sequences with motif3.31%
Average Position of motif in Targets46.5 +/- 26.0bp
Average Position of motif in Background49.6 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GVTCWTTCAA
GHATATKCAT
 A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GVTCWTTCAA
NATGTTGCAA
 A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

PH0073.1_Hoxc9/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GVTCWTTCAA---
GGAGGTCATTAATTAT
 A C G T A C G T A C G T A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GVTCWTTCAA---
NNCATTCATTCATNNN
 A C G T A C G T A C G T A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GVTCWTTCAA-
-MTGATGCAAT
 A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A A C G T
A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GVTCWTTCAA-
-ATGATGCAAT
 A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A A C G T
A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GVTCWTTCAA
GAATATTCAT
 A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

CEBPA/MA0102.3/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GVTCWTTCAA-
NATTGTGCAAT
 A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A A C G T
C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GVTCWTTCAA------
--ACATTCATGACACG
 A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GVTCWTTCAA
NGCAATTAAA
 A C T G T G A C A G C T A G T C C G T A C G A T A C G T T G A C C G T A C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A