Information for 4-CTGCCATTAT (Motif 10)

A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T
Reverse Opposite:
T C G A G A C T G T C A C G T A C G A T T C A G T C A G A G T C G T C A A C T G
p-value:1e-7
log p-value:-1.733e+01
Information Content per bp:1.717
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.61%
Number of Background Sequences with motif868.7
Percentage of Background Sequences with motif1.78%
Average Position of motif in Targets49.8 +/- 28.2bp
Average Position of motif in Background49.7 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCATTAT-
GCNGCCATCTTG
 A C G T A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGCCATTAT
GTCCGCCATTA-
 A C G T A C G T A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTGCCATTAT-
---CCTTTGTT
 A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTGCCATTAT--
--NCCATTGTTY
 A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T A C G T A C G T
A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTGCCATTAT-
---CCWTTGTY
 A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCATTAT-
GCCGCCATCTTG
 A C G T A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGCCATTAT--
--NCCATTGTTC
 A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T A C G T A C G T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CTGCCATTAT-
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTGCCATTAT---
---CCATTGTTYB
 A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGCCATTAT
CTGCCCGCA-
 A G T C A C G T T C A G A G T C A G T C G C T A G A C T C A G T C T G A A C G T
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T