Information for 5-CGGCAGCTTC (Motif 9)

A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C
Reverse Opposite:
A C T G C T G A C G T A A C T G A G T C C A G T A T C G A G T C G T A C A C T G
p-value:1e-8
log p-value:-1.865e+01
Information Content per bp:1.871
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.03%
Number of Background Sequences with motif916.7
Percentage of Background Sequences with motif1.90%
Average Position of motif in Targets53.4 +/- 26.7bp
Average Position of motif in Background51.5 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.73
Offset:5
Orientation:forward strand
Alignment:CGGCAGCTTC-
-----GCTTCC
 A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGGCAGCTTC--
CAGCTGTTTCCT
 A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C A C G T A C G T
G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGGCAGCTTC-
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CGGCAGCTTC-----
CTCAGCAGCTGCTACTG
 A C G T A C G T A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

NHLH1/MA0048.2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGGCAGCTTC-
-CGCAGCTGCG
 A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C A C G T
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGCAGCTTC-
NNAGCAGCTGCT
 A C G T A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGGCAGCTTC-
-AGCAGCTGCT
 A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C A C G T
A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGGCAGCTTC
CAGCAGCTGN
 A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CGGCAGCTTC
----NGCTN-
 A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CGGCAGCTTC-
-----GCTCCG
 A G T C A C T G A C T G A T G C G T C A A C T G A G T C A C G T A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G