Information for 5-AAGCACAATAGGA (Motif 9)

T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A G C T C G T A A G C T A C G T A T C G A C G T A T C G T A G C A C G T A C G T
p-value:1e-12
log p-value:-2.792e+01
Information Content per bp:1.809
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif30.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets48.8 +/- 26.5bp
Average Position of motif in Background41.2 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AAGCACAATAGGA---
NNTNNACAATGGGANNN
 A C G T T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAGCACAATAGGA
-RNAACAATGG--
 T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAGCACAATAGGA
--GAACAATGGN-
 T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AAGCACAATAGGA
---RACAAWGG--
 T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAGCACAATAGGA
NWAACCACADNN---
 A C G T A C G T T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGCACAATAGGA
NAAACCACAG-----
 A C G T A C G T T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAGCACAATAGGA
AAACCACANN----
 A C G T T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AAGCACAATAGGA-
TCACGGAACAATAGGTG
 A C G T A C G T A C G T T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AAGCACAATAGGA
---GACAATGNN-
 T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGCACAATAGGA--
GAGCACAGCAGGACA
 T G C A C G T A A T C G A T G C C G T A A T G C C G T A C T G A C G A T C T G A A C T G A C T G C T G A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A