Information for 4-AGAGAATGGA (Motif 13)

G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A
Reverse Opposite:
G A C T A G T C G T A C C G T A A G C T G C A T G A T C A G C T A T G C C G A T
p-value:1e-10
log p-value:-2.505e+01
Information Content per bp:1.680
Number of Target Sequences with motif109.0
Percentage of Target Sequences with motif17.17%
Number of Background Sequences with motif4130.6
Percentage of Background Sequences with motif8.76%
Average Position of motif in Targets51.2 +/- 27.5bp
Average Position of motif in Background50.1 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGAGAATGGA----
GGAGAAAGGTGCGA
 G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGAATGGA
RAACAATGGN
 G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGAGAATGGA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAATGGA
AAAACAATGG-
 A C G T G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGAGAATGGA--
CTCACACAATGGCGC
 A C G T A C G T A C G T G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAATGGA
VRAACAATGG-
 A C G T G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGAGAATGGA
-AACAAAGG-
 G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAGAATGGA
-RACAAWGG-
 G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAGAATGGA
-GACAATGNN
 G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGAGAATGGA----
NNTNNACAATGGGANNN
 A C G T A C G T A C G T G C T A T A C G C T G A C T A G C G T A T C G A C G A T C A T G T C A G C T G A A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A