Information for 21-GCAGTTGCTATGA (Motif 46)

A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T C G T A A C T G A G T C C G T A C T G A G A T C A C G T C T A G A G T C
p-value:1e-6
log p-value:-1.428e+01
Information Content per bp:1.938
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.2 +/- 16.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GCAGTTGCTATGA
-CTGTTGCTAGGS
 A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCAGTTGCTATGA--
NNCGTTGCTATGGNN
 A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCAGTTGCTATGA--
NCCGTTGCTANGNGN
 A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GCAGTTGCTATGA------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCAGTTGCTATGA
AGCAGCTGCT----
 A C G T A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGTTGCTATGA
NNNNAGCAGCTGCTGAN-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCAGTTGCTATGA
CGCAGCTGCG----
 A C G T A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCAGTTGCTATGA----
---GTTGCCATGGNAAC
 A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCAGTTGCTATGA----
--KGTTGCTAGGMAACA
 A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAGTTGCTATGA
AGCAGCTGCTNN--
 A C G T A C T G A G T C C G T A C T A G A G C T A C G T A C T G A G T C A C G T C G T A A C G T A C T G C G T A
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T