Information for 7-GTYSTCCCATTGTGCT (Motif 14)

A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
Reverse Opposite:
C G T A C T A G T A G C G T C A G A T C C G T A C T G A C G A T C T A G T A C G A T C G C G T A T A C G T C A G G T C A G T A C
p-value:1e-12
log p-value:-2.942e+01
Information Content per bp:1.594
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.49%
Number of Background Sequences with motif399.5
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets47.2 +/- 23.3bp
Average Position of motif in Background50.5 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.70
Offset:5
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT
-----NCCATTGTTC-
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.70
Offset:6
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT
------CCATTGTTTT
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.69
Offset:6
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT
------CCWTTGTYYB
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT--
-TGTTCCCATTGTGTACT
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T A C G T A C G T
A C G T C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.68
Offset:6
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT
------CCWTTGTY--
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.68
Offset:6
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT
------CCTTTGTT--
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.67
Offset:6
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT
------CCATTGTTYB
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GTYSTCCCATTGTGCT
-----NCCATTGTTY-
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.67
Offset:6
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT
------CCTTTGTTTT
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.66
Offset:6
Orientation:forward strand
Alignment:GTYSTCCCATTGTGCT
------YCTTTGTTCC
 A C T G C A G T A G T C A T G C G C A T T A G C A T G C A G T C G C T A A G C T C G A T C T A G A C G T A T C G G A T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C