Information for 4-GCATAACAAT (Motif 11)

T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T
Reverse Opposite:
C G T A A G C T C A G T A C T G G A C T G A C T C G T A C G A T T C A G A G T C
p-value:1e-13
log p-value:-3.121e+01
Information Content per bp:1.646
Number of Target Sequences with motif86.0
Percentage of Target Sequences with motif12.08%
Number of Background Sequences with motif2222.8
Percentage of Background Sequences with motif4.89%
Average Position of motif in Targets44.2 +/- 27.6bp
Average Position of motif in Background50.8 +/- 35.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:GCATAACAAT
---NAACAAT
 T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T
A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----GCATAACAAT-
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:GCATAACAAT
----AACAAT
 T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T
A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GCATAACAAT-
ATTTGCATAACAATG
 A C G T A C G T A C G T A C G T T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GCATAACAAT--
NTTNAGAACAATTA
 A C G T A C G T T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T A C G T A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0172.1_Sox1_2/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCATAACAAT-----
NNNTAACAATTATAN
 T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T A C G T A C G T A C G T A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GCATAACAAT
-GTAAACAAT
 T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T
A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GCATAACAAT----
NNTNANAACAATTNNA
 A C G T A C G T T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T A C G T A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0121.1_Foxj3_2/Jaspar

Match Rank:9
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GCATAACAAT---
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GCATAACAAT--
ATGTCACAACAACAC
 A C G T A C G T A C G T T C A G A G T C G C T A G C A T C T G A C T G A T G A C G T C A T C G A G C A T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C