Information for 12-TGGAKGAGAA (Motif 40)

C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A
Reverse Opposite:
A C G T A G C T A T G C A G C T G T A C G T C A C A G T A T G C A G T C G C T A
p-value:1e-5
log p-value:-1.274e+01
Information Content per bp:1.675
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.49%
Number of Background Sequences with motif1169.3
Percentage of Background Sequences with motif2.47%
Average Position of motif in Targets46.0 +/- 28.8bp
Average Position of motif in Background49.4 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGGAKGAGAA--
ATTTGCATAACAAAG
 A C G T A C G T A C G T C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGGAKGAGAA---
---GGGAGGACNG
 C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGGAKGAGAA---
---RNAACAATGG
 C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGGAKGAGAA--
--CSTGGGAAAD
 C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A A C G T A C G T
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

PB0194.1_Zbtb12_2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGGAKGAGAA----
TATCATTAGAACGCT
 A C G T C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A A C G T A C G T A C G T A C G T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGAKGAGAA
TGGAACAGMA
 C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TGGAKGAGAA----
-----GACAATGNN
 C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGGAKGAGAA
-GGATTAGC-
 C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGGAKGAGAA--
ATTTGCATAACAATG
 A C G T A C G T A C G T C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGGAKGAGAA
--RHTGWCAR
 C G A T C T A G A T C G G T C A A C G T A C T G C T G A A T C G T C G A C G T A
A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A