Information for 6-AGCADCCAGGCAGGGV (Motif 7)

C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G
Reverse Opposite:
A G T C A G T C G T A C A G T C A C G T A T C G G T A C A G T C A C G T A C T G A T C G G T C A A G C T A C T G A G T C A C G T
p-value:1e-10
log p-value:-2.490e+01
Information Content per bp:1.815
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.8 +/- 27.3bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGCADCCAGGCAGGGV
-SCAGYCADGCATGAC
 C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGCADCCAGGCAGGGV-
-GCAGCCAAGCGTGACN
 C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGCADCCAGGCAGGGV
-----CCAGACAG---
 C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGCADCCAGGCAGGGV-
------AAGGCAAGTGT
 C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCADCCAGGCAGGGV-
CAAATCCAGACATCACA
 C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PAX5/MA0014.2/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGCADCCAGGCAGGGV
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGCADCCAGGCAGGGV
TGGCAGNCTGCCAG---
 A C G T C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AGCADCCAGGCAGGGV
CAGCC------------
 A C G T C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGCADCCAGGCAGGGV
ACTAGCCAATCA----
 C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGCADCCAGGCAGGGV
AAATGGACCAATCAG---
 A C G T A C G T C G T A A C T G A G T C T C G A C A G T A T G C G T A C C G T A A C T G A C T G A T G C G T C A A C T G A C T G C T A G T A C G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T