Information for 10-CATGCTCCTCTGC (Motif 10)

A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C
Reverse Opposite:
A C T G A T G C C G T A A T C G C G T A A C T G A C T G C G T A A T C G G T A C C T G A C G A T A T C G
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.774
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets61.0 +/- 28.3bp
Average Position of motif in Background45.7 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTCCTCTGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CATGCTCCTCTGC----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CATGCTCCTCTGC
GTCATGCHTGRCTGS
 A C G T A C G T A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CATGCTCCTCTGC----
---TGACCTTTGCCCTA
 A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CATGCTCCTCTGC------
--AATCGCACTGCATTCCG
 A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CATGCTCCTCTGC-
----CGCAGCTGCG
 A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C A C G T
A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CATGCTCCTCTGC----
CCNNACCATCTGGCCTN
 A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CATGCTCCTCTGC-----
---TGACCTTTGCCCTAN
 A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CATGCTCCTCTGC----
---TGACCTTTGCCCCA
 A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:CATGCTCCTCTGC---
----NVCAGCTGBBNN
 A T G C C G T A A G C T C A T G A T G C G C A T A G T C G T A C C G A T A T G C A C G T A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C