Information for 15-AATTMATTTGCCA (Motif 38)

G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
Reverse Opposite:
A G C T A C T G C A T G T A G C G C T A C G T A C G T A C G A T A C G T G T C A T C G A A C G T A C G T
p-value:1e-5
log p-value:-1.275e+01
Information Content per bp:1.714
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif110.1
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets38.3 +/- 24.4bp
Average Position of motif in Background48.4 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0132.1_Pax6/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AATTMATTTGCCA
GNNAATTAATTAATCA
 A C G T A C G T A C G T G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
C A T G G C A T A T G C T G C A T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T G A T C T C G A

Lhx3/MA0135.1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AATTMATTTGCCA
GATTAATTAATTT----
 A C G T A C G T A C G T A C G T G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T A C G T A C G T A C G T A C G T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATTMATTTGCCA
CNNAGTAATTAATTNNC--
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C A C G T A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AATTMATTTGCCA
TAATTGATTA----
 A C G T G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A A C G T A C G T A C G T A C G T

PH0149.1_Pou3f4/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AATTMATTTGCCA
GANTTAATTAATTAANN-
 A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T A C G T

PH0142.1_Pou1f1/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AATTMATTTGCCA
GANTTAATTAATTANNN-
 A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C A C G T

PH0146.1_Pou3f1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AATTMATTTGCCA
NANTTAATTAATTANNN-
 A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AATTMATTTGCCA----
--NNAATTAGTCACGGT
 G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

RAX/MA0718.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AATTMATTTGCCA
-NTTAATTGNN--
 G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
A C G T C T A G G A C T G C A T C G T A C G T A C A G T C G A T C T A G T C A G A G T C A C G T A C G T

PH0028.1_En1/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AATTMATTTGCCA
GNATTAATTAGTTNNC--
 A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G C T A C G T T G C A C G T A A C G T C G A T C A G T A T C G G T A C G T A C C T G A
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C A C G T A C G T