Information for 2-CTGTGTCCTTTSG (Motif 5)

A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G
Reverse Opposite:
A G T C A T C G C G T A C G T A C T G A A C T G A C T G C G T A A T G C C G T A G T A C C G T A A T C G
p-value:1e-11
log p-value:-2.728e+01
Information Content per bp:1.837
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.9 +/- 26.0bp
Average Position of motif in Background59.3 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGTGTCCTTTSG--
NNNGTGACCTTTGNNN
 A C G T A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTGTCCTTTSG--
NNNNTGACCTTTNNNN
 A C G T A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGTGTCCTTTSG
--GTGACCTT---
 A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTGTGTCCTTTSG--
---TGACCTTTNCNT
 A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGTGTCCTTTSG
--CTGACCTTTG-
 A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGTGTCCTTTSG
-BNTGDCCTTG--
 A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGTGTCCTTTSG
CAGCTGTTTCCT----
 A C G T A C G T A C G T A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G
G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T A C G T A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTCCTTTSG--
NNTGTTTATTTTGGCA
 A C G T A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G A C G T A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTGTGTCCTTTSG
CNNTTGACCTTTG-
 A C G T A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTGTGTCCTTTSG-----
---TGGACTTTGNNCTCN
 A T G C A C G T A C T G C G A T A T C G A C G T A G T C A G T C A G C T A C G T A C G T A T G C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T