Information for 1-GCACCAAAGTATA (Motif 4)

A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A
Reverse Opposite:
A C G T G T C A A C G T C G T A G T A C A C G T A C G T A G C T C A T G A C T G A C G T C T A G A G T C
p-value:1e-12
log p-value:-2.776e+01
Information Content per bp:1.919
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif14.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.9 +/- 21.7bp
Average Position of motif in Background49.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCACCAAAGTATA
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GCACCAAAGTATA----
------AAGGATATNTN
 A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PB0082.1_Tcf3_1/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCACCAAAGTATA-
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GCACCAAAGTATA-
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCACCAAAGTATA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCACCAAAGTATA
AGAGTCCAAAGTCCA
 A C G T A C G T A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Foxa2/MA0047.2/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCACCAAAGTATA--
---NCTAAGTAAACA
 A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

PB0083.1_Tcf7_1/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GCACCAAAGTATA-
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

E2F1/MA0024.3/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GCACCAAAGTATA
TTTGGCGCCAAA-----
 A C G T A C G T A C G T A C G T A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A A C G T A C G T A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GCACCAAAGTATA
--NNATAAGGNN-
 A C T G A G T C G T C A A G T C G T A C C T G A C G T A C G T A A C T G A C G T G T C A A C G T C G T A
A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T