Information for 5-GCAGACACTACCT (Motif 12)

A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T C G T A A C T G C G A T A C T G A C G T G A T C A C G T A T C G A G T C
p-value:1e-9
log p-value:-2.274e+01
Information Content per bp:1.937
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.0 +/- 16.9bp
Average Position of motif in Background60.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GCAGACACTACCT--
-----CACTTCCTCT
 A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCAGACACTACCT
AGCGGCACACACGCAA-
 A C G T A C G T A C G T A C G T A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAGACACTACCT-----
--ACATGCTACCTAATAC
 A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCAGACACTACCT--
-----CACTTCCTGT
 A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGACACTACCT
CCAGACAG-----
 A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAGACACTACCT
CCAGACRSVB---
 A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCAGACACTACCT
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGACACTACCT-
AGATGCTRCTRCCHT
 A C G T A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAGACACTACCT
BCAGACWA-----
 A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GCAGACACTACCT---
------ACTTCCTGNT
 A C T G T A G C C G T A C T A G C G T A A G T C C G T A A G T C A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A C T G G C A T