Information for 4-TTGGCCVATTCTT (Motif 6)

A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T
Reverse Opposite:
G T C A C G T A A C T G C G T A C G T A C G A T A G T C A C T G A C T G G T A C A G T C G T C A C T G A
p-value:1e-8
log p-value:-2.071e+01
Information Content per bp:1.800
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.90%
Number of Background Sequences with motif23.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets58.8 +/- 24.8bp
Average Position of motif in Background45.6 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTGGCCVATTCTT-
NNGCACCTTTCTCC
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTGGCCVATTCTT----
TGTTCCCATTGTGTACT
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTGGCCVATTCTT-
----NCCATTGTTC
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TTGGCCVATTCTT--
-----CCATTGTTNY
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TTGGCCVATTCTT
-----CCTTTGTT
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TTGGCCVATTCTT--
-----CCATTGTTYB
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TTGGCCVATTCTT-
----NCCATTGTTY
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TTGGCCVATTCTT
-----CCWTTGTY
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TTGGCCVATTCTT-
-----CCATTGTTC
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TTGGCCVATTCTT------
--AATCAATTGTTCCGCTA
 A G C T A C G T C T A G A C T G A G T C G T A C T A C G C G T A A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A