Information for 3-ARRAAGCMCWRCYGGC (Motif 5)

C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C T G A A C T G A G C T C G A T A C T G A C T G A C T G A G T C A C G T A G C T A G C T G A C T A C G T
p-value:1e-9
log p-value:-2.230e+01
Information Content per bp:1.841
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 31.6bp
Average Position of motif in Background63.6 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:ARRAAGCMCWRCYGGC-
----TGCCCTGAGGGCA
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:ARRAAGCMCWRCYGGC-
----TGCCCNNAGGGCA
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:ARRAAGCMCWRCYGGC-
----TGCCCTGAGGGCA
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ARRAAGCMCWRCYGGC----
-----DCHCAGCAGGRGGCC
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:ARRAAGCMCWRCYGGC--
---GAGCACAGCAGGACA
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Gfi1b/MA0483.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:ARRAAGCMCWRCYGGC
--AAATCACAGCA---
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C
A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----ARRAAGCMCWRCYGGC
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C G T C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:ARRAAGCMCWRCYGGC
--AAATCACTGC----
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C
A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:ARRAAGCMCWRCYGGC--
------CACAGCAGGGGG
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:ARRAAGCMCWRCYGGC--
---CCACACAGCAGGAGA
 C G T A C T A G C T A G C T G A C G T A A C T G A G T C G T A C A G T C C G T A T C A G A G T C A G C T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A