Information for 2-GAAATTAAAGAGG (Motif 2)

A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G T C A C G T A G C T A C G T C T G A C G T A A C G T A C G T A C G T A G T C
p-value:1e-10
log p-value:-2.507e+01
Information Content per bp:1.946
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 23.2bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAAATTAAAGAGG----
-AAATTCAAGTGGNTTN
 A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GAAATTAAAGAGG
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GAAATTAAAGAGG
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAAATTAAAGAGG----
-AANTTCAAGTGGCTTN
 A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAAATTAAAGAGG
---ATTAAA----
 A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAAATTAAAGAGG----
-AATTTCAAGTGGCTTN
 A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0150.1_Pou4f3/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAAATTAAAGAGG--
AGTTATTAATGAGGTC
 A C G T A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G A C G T A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAAATTAAAGAGG----
GACGATAATGAGCTTGC
 A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAAATTAAAGAGG
GGAAGTGAAAST--
 A C G T A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G
C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAAATTAAAGAGG
GCAATAAAAA---
 A C T G C G T A C G T A G T C A A C G T A G C T C G T A C T G A C G T A A C T G C G T A A C T G A C T G
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T