Information for 6-GAGHGAGAVA (Motif 16)

A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A
Reverse Opposite:
A G C T A G T C A C G T A G T C C G A T A G T C C A T G A G T C A G C T A T G C
p-value:1e-5
log p-value:-1.178e+01
Information Content per bp:1.779
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif3.86%
Number of Background Sequences with motif230.1
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets41.3 +/- 18.0bp
Average Position of motif in Background48.1 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-1.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGHGAGAVA---
TTGACCGAGAATTCC
 A C G T A C G T A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGHGAGAVA-
AGGTGNCAGACAG
 A C G T A C G T A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGHGAGAVA-
-GGCGGGAARN
 A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T
A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGHGAGAVA---
NNNACCGAGAGTNNN
 A C G T A C G T A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGHGAGAVA
AGGTGHCAGACA
 A C G T A C G T A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

E2F6/MA0471.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGHGAGAVA-
GGGCGGGAAGG
 A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

PB0138.1_Irf4_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GAGHGAGAVA---
GNNACCGAGAATNNN
 A C G T A C G T A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAGHGAGAVA--
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T A C G T A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGHGAGAVA--
GAAAGTGAAAGT
 A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

E2F4/MA0470.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGHGAGAVA-
GGGCGGGAAGG
 A T C G C T G A A C T G G T A C A C T G C G T A A C T G G T C A T C A G C T G A A C G T
A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G