Information for 3-TGGATGGCAC (Motif 14)

A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C
Reverse Opposite:
A T C G A G C T A C T G T A G C G T A C G C T A G C A T T G A C A T G C C T G A
p-value:1e-6
log p-value:-1.562e+01
Information Content per bp:1.739
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif6.28%
Number of Background Sequences with motif474.3
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets50.3 +/- 26.8bp
Average Position of motif in Background50.0 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TGGATGGCAC
-GGTTGGCAT
 A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGGATGGCAC---
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGGATGGCAC
-ARNTGACA-
 A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C
A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGGATGGCAC
--CTTGGCAA
 A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGGATGGCAC-
-VGCTGWCAVB
 A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGATGGCAC--
TGTCTGDCACCT
 A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGGATGGCAC-
--NTTGGCANN
 A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGATGGCAC--
GGGATTGCATNN
 A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C A C G T A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGGATGGCAC------
ATAAATGACACCTATCA
 A C G T A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGGATGGCAC--
CTGTCTGTCACCT
 A C G T A G C T T A C G A C T G C G T A C A G T C A T G A T C G T G A C C T G A T A G C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T