Information for 1-CTCGSWCCSTCTG (Motif 1)

A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G
Reverse Opposite:
A G T C C G T A A T C G C G T A A T G C A C T G A C T G G C A T A T C G A G T C A C T G C G T A A C T G
p-value:1e-10
log p-value:-2.507e+01
Information Content per bp:1.891
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.6 +/- 25.9bp
Average Position of motif in Background68.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CTCGSWCCSTCTG-
----VBSYGTCTGG
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CTCGSWCCSTCTG-
------CTGTCTGG
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTCGSWCCSTCTG-----
-CCNNACCATCTGGCCTN
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTCGSWCCSTCTG--
-----ACCATCTGTT
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTCGSWCCSTCTG--
-----GCCATCTGTT
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CTCGSWCCSTCTG--
-----RCCATMTGTT
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTCGSWCCSTCTG--
---CGACCATCTGTT
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G T A C T A C G C T G A G T A C A T G C C G T A A C G T G T A C A C G T A C T G A C G T G A C T

PB0138.1_Irf4_2/Jaspar

Match Rank:8
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CTCGSWCCSTCTG
AGTATTCTCGGTTGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CTCGSWCCSTCTG----
-------GGTCTGGCAT
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTCGSWCCSTCTG
---GCTCCG----
 A G T C A C G T A G T C A C T G A T G C C G A T A G T C G T A C A T C G A C G T A T G C A C G T A C T G
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T