Information for 1-RGAACAATGV (Motif 2)

C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A
Reverse Opposite:
A G C T A T G C G C T A G A C T C A G T C T A G C G A T A C G T G A T C G A C T
p-value:1e-46
log p-value:-1.066e+02
Information Content per bp:1.613
Number of Target Sequences with motif178.0
Percentage of Target Sequences with motif20.77%
Number of Background Sequences with motif2877.0
Percentage of Background Sequences with motif6.07%
Average Position of motif in Targets51.9 +/- 27.4bp
Average Position of motif in Background51.2 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:RGAACAATGV
RNAACAATGG
 C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----RGAACAATGV---
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:RGAACAATGV
--AACAAT--
 C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A
A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.89
Offset:1
Orientation:forward strand
Alignment:RGAACAATGV-
-RAACAATGGN
 C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A A C G T
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:RGAACAATGV
VRAACAATGG
 C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:RGAACAATGV-
-GAACAATGGN
 C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--RGAACAATGV----
AATGAACAATGGAATT
 A C G T A C G T C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A A C G T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:RGAACAATGV
AAAACAATGG
 C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.88
Offset:-4
Orientation:reverse strand
Alignment:----RGAACAATGV
NTTNAGAACAATTA
 A C G T A C G T A C G T A C G T C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:RGAACAATGV
-GAACAATGG
 C T G A C T A G T G C A C G T A A G T C G T C A C T G A C G A T T A C G T C G A
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G