Information for 11-CTKGCTGGCWCTG (Motif 16)

A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
Reverse Opposite:
T A G C T C G A A T C G G C T A A C T G A T G C A G T C T G C A T C A G T A G C G T A C T C G A C T A G
p-value:1e-8
log p-value:-2.063e+01
Information Content per bp:1.636
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.73%
Number of Background Sequences with motif490.3
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets44.7 +/- 24.3bp
Average Position of motif in Background51.0 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTKGCTGGCWCTG
---NTTGGCANN-
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTKGCTGGCWCTG
-TGTCTGDCACCT
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTKGCTGGCWCTG
CTGTCTGTCACCT
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTKGCTGGCWCTG-
--GSCTGTCACTCA
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G A C G T
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTKGCTGGCWCTG
-GGTCTGGCAT--
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTKGCTGGCWCTG
----TTGGCA---
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTKGCTGGCWCTG
--GGTTGGCAT--
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTKGCTGGCWCTG
CTGTCTGG-----
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTKGCTGGCWCTG
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTKGCTGGCWCTG
---CTTGGCAA--
 A G T C A G C T C A T G A T C G A G T C A C G T C T A G T A C G T G A C C G A T A T G C A C G T A T C G
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T