Information for 1-AGGTCAVHSTGMCCTB (Motif 1)

C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
Reverse Opposite:
T G A C C T G A C T A G C T A G C A G T A G T C C G T A T A G C C G A T A C T G G C A T T C A G G C T A G A T C G A T C G A C T
p-value:1e-60
log p-value:-1.393e+02
Information Content per bp:1.527
Number of Target Sequences with motif145.0
Percentage of Target Sequences with motif16.92%
Number of Background Sequences with motif1475.7
Percentage of Background Sequences with motif3.11%
Average Position of motif in Targets49.6 +/- 21.9bp
Average Position of motif in Background51.1 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR2/MA0258.2/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:AGGTCAVHSTGMCCTB
AGGTCACCCTGACCT-
 C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAVHSTGMCCTB
NAGGTCACNNTGACC--
 A C G T C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAVHSTGMCCTB
AAGGTCACGGTGACCTG
 A C G T C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AGGTCAVHSTGMCCTB
AGNACAGNCTGTTCTN
 C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

PPARG/MA0066.1/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAVHSTGMCCTB--
GTAGGTCACGGTGACCTACT
 A C G T A C G T C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AGGTCAVHSTGMCCTB
AGNACANNNTGTNCTN
 C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AGGTCAVHSTGMCCTB
-GRACAGWMTGTYCTB
 C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AGGTCAVHSTGMCCTB
-GVACAGNMTGTYCTB
 C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

NR3C2/MA0727.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAVHSTGMCCTB
GGGAACACAATGTTCCC
 A C G T C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCAVHSTGMCCTB
NGGAACATNATGTACCC
 A C G T C T G A C T A G C T A G C G A T A G T C C G T A T A G C G C T A A T C G G C A T C T A G G T C A G A T C G A T C G A C T A C T G
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C