Information for 3-TGAAAMTCTGGCAGAA (Motif 5)

C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
Reverse Opposite:
A C G T G A C T G A T C A C G T A C T G A T G C G T A C C G T A T C A G C G T A A C G T C G A T A C G T A G C T A G T C G T C A
p-value:1e-20
log p-value:-4.641e+01
Information Content per bp:1.659
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.39%
Number of Background Sequences with motif134.0
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets50.7 +/- 22.5bp
Average Position of motif in Background53.6 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGAAAMTCTGGCAGAA
TGGCAGNCTGCCAG--
 C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGAAAMTCTGGCAGAA
CTTGGCANNNTGCCAA--
 A C G T A C G T C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.66
Offset:7
Orientation:forward strand
Alignment:TGAAAMTCTGGCAGAA
-------TTGCCAAG-
 C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGAAAMTCTGGCAGAA
TTGGCATGGTGCCA---
 A C G T C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TGAAAMTCTGGCAGAA
------NTTGGCANN-
 C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGAAAMTCTGGCAGAA-
-CAATCACTGGCAGAAT
 C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A A C G T
A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TGAAAMTCTGGCAGAA
-----NNTTGGCANN-
 C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.58
Offset:7
Orientation:forward strand
Alignment:TGAAAMTCTGGCAGAA
-------TTGGCA---
 C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TGAAAMTCTGGCAGAA-
-------ATGCCAGACN
 C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TGAAAMTCTGGCAGAA
-----ARNTGACA---
 C A G T A C T G C T G A G T C A G C T A T G C A G C A T A G T C A C G T A C T G A T C G G T A C C G T A C T A G C T G A G T C A
A C G T A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T