Information for 3-TGACCTAGGTCAV (Motif 3)

A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
Reverse Opposite:
A G T C A C G T A C T G G T C A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A
p-value:1e-59
log p-value:-1.365e+02
Information Content per bp:1.893
Number of Target Sequences with motif166.0
Percentage of Target Sequences with motif19.46%
Number of Background Sequences with motif1987.8
Percentage of Background Sequences with motif4.26%
Average Position of motif in Targets50.9 +/- 22.8bp
Average Position of motif in Background50.7 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGACCTAGGTCAV
TGACCTARTT---
 A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGACCTAGGTCAV
--ATCAAGGTCA-
 A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGACCTAGGTCAV
TGACCT-------
 A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGACCTAGGTCAV
TATAAGTAGGTCAA
 A C G T A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGACCTAGGTCAV
---CAAAGGTCAG
 A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TGACCTAGGTCAV
---TCAAGGTCAN
 A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGACCTAGGTCAV---
CGCGCCGGGTCACGTA
 A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGACCTAGGTCAV
NNCNTGACCCCGCTCT-
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGACCTAGGTCAV
----TRAGGTCA-
 A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGACCTAGGTCAV
TGACAGCTGTCA-
 A C G T A C T G C G T A A G T C A G T C A G C T C T G A A C T G A C T G A C G T A G T C C G T A T A C G
G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A A C G T