Information for 1-RGGTCASBSTGACCYG (Motif 1)

C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G
Reverse Opposite:
G A T C C T G A C A T G C T A G C A G T A G T C C T G A T A G C T A G C A T C G G A C T T C A G G T C A A G T C G T A C G A C T
p-value:1e-473
log p-value:-1.089e+03
Information Content per bp:1.580
Number of Target Sequences with motif381.0
Percentage of Target Sequences with motif44.67%
Number of Background Sequences with motif588.9
Percentage of Background Sequences with motif1.26%
Average Position of motif in Targets53.0 +/- 20.6bp
Average Position of motif in Background51.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:RGGTCASBSTGACCYG
-GGTCANNGTGACCTN
 C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RGGTCASBSTGACCYG
AGGNCANNGTGACCT-
 C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-RGGTCASBSTGACCYG
AAGGTCACGGTGACCTG
 A C G T C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---RGGTCASBSTGACCYG-
AGTAGGTCACNGTGACCTAC
 A C G T A C G T A C G T C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.69
Offset:9
Orientation:reverse strand
Alignment:RGGTCASBSTGACCYG
---------TGACCT-
 C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-RGGTCASBSTGACCYG
NAGAACAGNCTGTNCT-
 A C G T C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.66
Offset:9
Orientation:reverse strand
Alignment:RGGTCASBSTGACCYG-
---------TGACCTYA
 C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.66
Offset:9
Orientation:reverse strand
Alignment:RGGTCASBSTGACCYG-
---------TGACCYCT
 C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:RGGTCASBSTGACCYG
AGNACANNNTGTNCTN
 C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:RGGTCASBSTGACCYG-----
-----NNNNTGACCCGGCGCG
 C T G A C A T G T C A G C A G T A G T C C T G A T A G C A T C G A T C G G A C T T C A G G T C A G A T C G T A C G A C T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G