Information for 10-TTGACCTAGGTCA (Motif 15)

A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T C T A G C G T A G T A C A G T C A C G T C T G A C T A G A C T G A C G T A G T C C G T A C T G A
p-value:1e-10
log p-value:-2.360e+01
Information Content per bp:1.820
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.5 +/- 27.4bp
Average Position of motif in Background60.6 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TTGACCTAGGTCA
-TGACCTARTT--
 A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTGACCTAGGTCA-
TTGACCTANTTATN
 A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTGACCTAGGTCA
-TGACCTTGAT--
 A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTGACCTAGGTCA
-TGACCT------
 A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTGACCTAGGTCA
CNNTTGACCTTTG---
 A C G T A C G T A C G T A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTGACCTAGGTCA
-TGACCTYA----
 A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TTGACCTAGGTCA
TGACCTTGACCT------
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTGACCTAGGTCA
-TGACAGCTGTCA
 A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

PKNOX2/MA0783.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTGACCTAGGTCA
-TGACACCTGTCA
 A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTGACCTAGGTCA
-TGACCYCT----
 A G C T A C G T A C T G C G T A G T A C A G T C A G C T G T C A T A C G A C T G A C G T A G T C C G T A
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T