Information for 5-GGTCAGGCCS (Motif 9)

A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G
Reverse Opposite:
T A G C A C T G C T A G A T G C G T A C A C G T T A C G G T C A T A G C T G A C
p-value:1e-8
log p-value:-2.030e+01
Information Content per bp:1.730
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif10.19%
Number of Background Sequences with motif686.0
Percentage of Background Sequences with motif1.44%
Average Position of motif in Targets42.9 +/- 21.9bp
Average Position of motif in Background50.3 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GGTCAGGCCS-------
---CAGGCCNNGGCCNN
 A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.71
Offset:4
Orientation:forward strand
Alignment:GGTCAGGCCS--
----AGGCCTNG
 A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GGTCAGGCCS
--CTAGGCCT
 A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G
A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGGCCS-
CNGTCACGCCAC
 A C G T A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G A C G T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGTCAGGCCS
VBTGWCAGCB--
 A C G T A C G T A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGGCCS
AGGTCA-----
 A C G T A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGTCAGGCCS---
NNGGCCACGCCTTTN
 A C G T A C G T A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGTCAGGCCS
AGTCACGC--
 A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGTCAGGCCS-
-ATCACCCCAT
 A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G A C G T
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGTCAGGCCS
NTGTCAN----
 A C G T A C T G A T C G C A G T A G T C C G T A A C T G T A C G A G T C G T A C A T C G
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T