Information for 1-CAGGGTCASNGTGMCC (Motif 3)

A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C
Reverse Opposite:
A C T G A C T G A C G T A G T C C G T A A T G C A C T G A T C G A C G T A C T G C G T A A T G C G T A C A G T C A C G T A T C G
p-value:1e-12
log p-value:-2.792e+01
Information Content per bp:1.811
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif3.18%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets76.8 +/- 6.8bp
Average Position of motif in Background58.5 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CAGGGTCASNGTGMCC
-NAGGTCACNNTGACC
 A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C
A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR1/MA0112.3/Jaspar

Match Rank:2
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CAGGGTCASNGTGMCC--
-CAGGTCACCGTGACCTT
 A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C A C G T A C G T
A C G T T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.82
Offset:2
Orientation:forward strand
Alignment:CAGGGTCASNGTGMCC-
--AGGTCACCCTGACCT
 A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CAGGGTCASNGTGMCC----
GTAGGTCACGGTGACCTACT
 A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAGGGTCASNGTGMCC
CGCGCCGGGTCACGTA----
 A C G T A C G T A C G T A C G T A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGGGTCASNGTGMCC
TCAAGGTCAN-------
 A C G T A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CAGGGTCASNGTGMCC
--AGGTCA--------
 A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGGGTCASNGTGMCC
BTCAAGGTCA--------
 A C G T A C G T A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGGGTCASNGTGMCC
ATCAAGGTCA--------
 A C G T A C G T A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGGGTCASNGTGMCC
CAAGGHCANV------
 A T G C G T C A C T A G A C T G A T C G A C G T A G T C C G T A T A G C G T A C A T C G A C G T A C T G G T C A G T A C A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T A C G T