Information for 4-KRAAWATWCYMCC (Motif 10)

C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C
Reverse Opposite:
A C T G C T A G C A G T C T G A A C T G C G T A C G T A C G A T C G T A A C G T A C G T A G T C G T A C
p-value:1e-8
log p-value:-1.901e+01
Information Content per bp:1.815
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif3.18%
Number of Background Sequences with motif18.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets59.3 +/- 22.4bp
Average Position of motif in Background54.4 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TEAD4/MA0809.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:KRAAWATWCYMCC
--CACATTCCAT-
 C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C
A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:KRAAWATWCYMCC-------
---AAATTCCCCCCGGAAGT
 C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C T G A C A G T G C A T G A T C G A T C A G T C A G T C A T G C A T G C T A C G A T C G C T G A C T G A T C A G A G C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-KRAAWATWCYMCC
ATGMATATDC----
 A C G T C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KRAAWATWCYMCC-----
-AAGCATACGCCCAACTT
 C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KRAAWATWCYMCC
ATGAATATTC----
 A C G T C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

TEAD1/MA0090.2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:KRAAWATWCYMCC
--CACATTCCAT-
 C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C
A C G T A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----KRAAWATWCYMCC
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----KRAAWATWCYMCC
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:KRAAWATWCYMCC
-GGAAATTCCC--
 C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:KRAAWATWCYMCC------
--AGGAGACCCCCAATTTG
 C A T G C T A G C G T A C G T A C G A T C G T A A C G T C G A T A G T C A G C T G T C A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G