Information for 9-TGAAGCKWSAMKCCAG (Motif 8)

A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
Reverse Opposite:
G T A C C A G T C T A G A T C G T G C A C A T G A C G T A T C G G C A T T G A C T A C G A T G C A G C T A G C T A G T C G T C A
p-value:1e-12
log p-value:-2.826e+01
Information Content per bp:1.646
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif55.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets53.1 +/- 21.2bp
Average Position of motif in Background47.7 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGAAGCKWSAMKCCAG
AANTCATGCGTGAA-----
 A C G T A C G T A C G T A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGAAGCKWSAMKCCAG
NGAAGC----------
 A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGAAGCKWSAMKCCAG
NGCANTCATGCGTGACG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T A C G T A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGAAGCKWSAMKCCAG
TGCAGTCATGCGTGACG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGAAGCKWSAMKCCAG
CGGAGC----------
 A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----TGAAGCKWSAMKCCAG
GRTGMTRGAGCC---------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.49
Offset:-9
Orientation:forward strand
Alignment:---------TGAAGCKWSAMKCCAG
NGTGTTCAVTSAAGCGKAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T A C G T A C G T A C G T A C G T

ATF4/MA0833.1/Jaspar

Match Rank:8
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---TGAAGCKWSAMKCCAG
GGATGATGCAATA------
 A C G T A C G T A C G T A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T

E2F1/MA0024.3/Jaspar

Match Rank:9
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TGAAGCKWSAMKCCAG
TTTGGCGCCAAA------
 A C G T A C G T A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.48
Offset:3
Orientation:forward strand
Alignment:TGAAGCKWSAMKCCAG
---GGCGGGAARN---
 A C G T A C T G C T G A T C G A A T C G A G T C A C T G C G T A A T G C C G T A G T A C A C G T T A G C A G T C G T C A C A T G
A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T