Information for 17-GKCSCTGSSAAYAMWG (Motif 19)

A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
Reverse Opposite:
A G T C C G A T A C G T A C G T C T G A A C G T A C G T A T C G T A C G A G T C C G T A A T C G A T G C A C T G G T A C A G T C
p-value:1e-8
log p-value:-1.984e+01
Information Content per bp:1.820
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.8 +/- 24.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GKCSCTGSSAAYAMWG-
-------GGAACAAAGR
 A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GKCSCTGSSAAYAMWG
---CTTGGCAA-----
 A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GKCSCTGSSAAYAMWG
---GCTGTCAA-----
 A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GKCSCTGSSAAYAMWG
---CSTGGGAAAD---
 A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GKCSCTGSSAAYAMWG
---GGTGCCAAGT---
 A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GKCSCTGSSAAYAMWG
CAATCACTGGCAGAAT--
 A C G T A C G T A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GKCSCTGSSAAYAMWG
AAAGACCTGTCAATAC--
 A C G T A C G T A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GKCSCTGSSAAYAMWG-
-------VRRACAAWGG
 A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PH0102.1_Meis1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GKCSCTGSSAAYAMWG
AACGAGCTGTCAATAC--
 A C G T A C G T A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GKCSCTGSSAAYAMWG
AATTACCTGTCAATAC--
 A C G T A C G T A C T G A C T G A G T C T A C G A T G C A C G T C T A G A T G C A T G C C G T A C G T A A G C T C G T A G T C A C G T A A C T G
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C A C G T A C G T