Information for 17-CAARAGCCAAWAA (Motif 19)

A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
Reverse Opposite:
C G A T A G C T G C A T A C G T C G A T A C T G A C T G G T A C A G C T A G C T A C G T A C G T A C T G
p-value:1e-8
log p-value:-2.040e+01
Information Content per bp:1.765
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif58.8
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets47.6 +/- 25.9bp
Average Position of motif in Background58.7 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAARAGCCAAWAA
CCAACTGCCA----
 A C G T A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CAARAGCCAAWAA
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAARAGCCAAWAA
YAACBGCC-----
 A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CAARAGCCAAWAA
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAARAGCCAAWAA
-ACTAGCCAATCA
 A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAARAGCCAAWAA
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAARAGCCAAWAA
CGACCAACTGCCATGC-
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAARAGCCAAWAA
----TGCCAA---
 A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAARAGCCAAWAA
CCAACTGCCA----
 A C G T A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAARAGCCAAWAA
GGGGTCAAAGTCCAAT--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A T C G A C T G A A C T G A G T C A G T C C G T A T C G A C G T A C T G A C G T A
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T A C G T A C G T