Information for 9-RGTCAAGGCTGTN (Motif 6)

C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
Reverse Opposite:
T G C A T G C A T G A C C G T A C A T G A T G C G A T C G A C T C A G T A T C G T G C A T A G C G A C T
p-value:1e-13
log p-value:-3.106e+01
Information Content per bp:1.413
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 28.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.61
Offset:7
Orientation:forward strand
Alignment:RGTCAAGGCTGTN
-------GCTGTG
 C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:RGTCAAGGCTGTN
------NGCTN--
 C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RGTCAAGGCTGTN
-NTCAAGGTCA--
 C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RGTCAAGGCTGTN
AGGTCAAGGTCA--
 A C G T C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RGTCAAGGCTGTN---
-GGNGCGNCTGTTNNN
 C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:RGTCAAGGCTGTN
----TWGTCTGV-
 C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RGTCAAGGCTGTN
AGGTCAAGGTCA--
 A C G T C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RGTCAAGGCTGTN
-BTCAAGGTCA--
 C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RGTCAAGGCTGTN
AGTCACGC-----
 C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--RGTCAAGGCTGTN
AAGTTCAAGGTCAGC
 A C G T A C G T C T G A A T C G A C G T T A G C G T C A C T G A C T A G T A C G G T A C G C A T A C T G A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C