Information for 10-AGATTAGCCG (Motif 22)

C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
Reverse Opposite:
A G T C A C T G A C T G A G T C A C G T C G T A G T C A A C G T A T G C A C G T
p-value:1e-9
log p-value:-2.182e+01
Information Content per bp:1.884
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.7 +/- 22.0bp
Average Position of motif in Background45.2 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGATTAGCCG
GGATTAGC--
 C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGATTAGCCG
RGGATTAR---
 A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGATTAGCCG
NNGGATTAGN--
 A C G T A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AGATTAGCCG
VRGGATTARN--
 A C G T A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AGATTAGCCG
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGATTAGCCG
GNGGATTAGN--
 A C G T A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGATTAGCCG
NGGATTAA---
 A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGATTAGCCG
AAGAGGATTAG---
 A C G T A C G T A C G T A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGATTAGCCG--
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGATTAGCCG
CGGATTAN---
 A C G T C G T A A T C G C G T A A C G T A C G T C G T A A C T G A G T C G T A C T C A G
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T