Information for 2-GTCAKTCACAKGCASR (Motif 4)

A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
Reverse Opposite:
A G T C A T G C A C G T A T C G T A G C T G A C C A G T T A C G A C G T T C A G C G T A G T A C C G A T T A C G G T C A A T G C
p-value:1e-15
log p-value:-3.551e+01
Information Content per bp:1.649
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif30.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets57.0 +/- 18.6bp
Average Position of motif in Background42.8 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTCAKTCACAKGCASR
-TGAGTGACAGSC---
 A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTCAKTCACAKGCASR
SCTGTCAVTCAV-------
 A C G T A C G T A C G T A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTCAKTCACAKGCASR
NTGATTGACAGN----
 A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTCAKTCACAKGCASR
AGGTCANTGACCTN----
 A C G T A C G T A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTCAKTCACAKGCASR
----TTGACAGC----
 A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTCAKTCACAKGCASR
--HTTTCCCASG----
 A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTCAKTCACAKGCASR
CTCATTTGCATW----
 A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GTCAKTCACAKGCASR
----TTGACAGG----
 A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GTCAKTCACAKGCASR
BTVATTWGCATA----
 A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTCAKTCACAKGCASR-
-NNATTGACAGGTGCTT
 A T C G A C G T A G T C G C T A A C T G A C G T A G T C T G C A A T G C G T C A A C T G A T C G A T G C G T C A T A C G C T A G A C G T
A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T