Information for 7-GCAAACAAAG (Motif 16)

A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G
Reverse Opposite:
A T G C G C A T A C G T A G C T A T C G G C A T A C G T C G A T A C T G T G A C
p-value:1e-8
log p-value:-2.033e+01
Information Content per bp:1.543
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif109.3
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets56.2 +/- 24.6bp
Average Position of motif in Background54.0 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GCAAACAAAG-
-AAAACAAAGG
 A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----GCAAACAAAG-
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GCAAACAAAG----
CTCACACAATGGCGC
 A C G T A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCAAACAAAG-
-VRRACAAWGG
 A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

FOXP1/MA0481.1/Jaspar

Match Rank:5
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GCAAACAAAG
CAAAAGTAAACAAAG
 A C G T A C G T A C G T A C G T A C G T A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCAAACAAAG-
-AAAACAATGG
 A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G A C G T
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:GCAAACAAAG
----ACAAAG
 A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GCAAACAAAG--
--RAACAATGGN
 A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G A C G T A C G T
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCAAACAAAG
GTAAACAAT-
 A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCAAACAAAG----
AAACAGACAAAGGAAT
 A C G T A C G T A C T G T G A C G C T A T G C A C G T A T A G C T C G A T G C A C G T A T A C G A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T