Information for 5-TGAATAGTTGCTC (Motif 6)

A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A G T C C G T A C G T A A G T C A C G T C G T A A C G T A C G T A G T C C G T A
p-value:1e-3
log p-value:-7.382e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGAATAGTTGCTC
ATGAATATTC----
 A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGAATAGTTGCTC--
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGAATAGTTGCTC--
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGAATAGTTGCTC
--AATAATT----
 A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C
A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGAATAGTTGCTC
ATGAATAATTAATG
 A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

MYF6/MA0667.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGAATAGTTGCTC
--AACAGCTGTT-
 A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C
A C G T A C G T T C G A C T G A A T G C C G T A T C A G A G T C A G C T A C T G A G C T A G C T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGAATAGTTGCTC-
GAAGAACAGGTGTCCG
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C A C G T
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGAATAGTTGCTC--
ATGCATAATTAATGAG
 A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGAATAGTTGCTC---------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0066.1_Sox17_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGAATAGTTGCTC
NNATNAATTGTTTNN-
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C T G A C G T A C G T A C T G A G T C A C G T A G T C
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T A C G T