Information for 1-CAWATGCATAACA (Motif 2)

A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T C A G T G C T A C G A T A C T G A G T C C G T A C G A T G C T A A C G T A T C G
p-value:1e-10
log p-value:-2.405e+01
Information Content per bp:1.735
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif26.09%
Number of Background Sequences with motif100.0
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets56.7 +/- 27.8bp
Average Position of motif in Background43.1 +/- 36.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAWATGCATAACA---
-ATTTGCATAACAATG
 A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A A C G T A C G T A C G T
A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CAWATGCATAACA---
-ATTTGCATAACAAAG
 A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A A C G T A C G T A C G T
A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAWATGCATAACA-----
-AACACCAAAACAAAGGA
 A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAWATGCATAACA-----
--ATATCAAAACAAAACA
 A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAWATGCATAACA------
VCAKCTGGNNNCCAGMTGBN
 A C G T A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAWATGCATAACA
-ATTTGCATAA--
 A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAWATGCATAACA
TNTAATTTGCATACNA
 A C G T A C G T A C G T A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAWATGCATAACA
TNTAATTTGCATACNA
 A C G T A C G T A C G T A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU3F1/MA0786.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAWATGCATAACA
TAATTTGCATAA--
 A C G T A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAWATGCATAACA
TNTAATTTGCATANNN
 A C G T A C G T A C G T A T G C C G T A C G A T G C T A C G A T C T A G G T A C C G T A C G A T G T C A C G T A A T G C C G T A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A