Information for 15-GAGGMCWSCAGWKCAG (Motif 32)

A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G G T C A C G T A A G T C A C G T A C T G A T C G C G T A A C T G A C G T A G T C A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.001e+01
Information Content per bp:1.870
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.3 +/- 35.2bp
Average Position of motif in Background72.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGGMCWSCAGWKCAG
GAGGTCAAAAGGTCA-
 A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T

RARA/MA0729.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGGMCWSCAGWKCAG--
GAGGTCAAAAGGTCAATG
 A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

Rarg/MA0859.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGGMCWSCAGWKCAG
AAGGTCAAAAGGTCAA
 A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAGGMCWSCAGWKCAG--
-NNNANTGCAGTGCNNTT
 A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G A C G T A C G T
A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Rarb/MA0857.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGGMCWSCAGWKCAG
AAAGGTCAAAAGGTCA-
 A C G T A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GAGGMCWSCAGWKCAG
-AGGCCTNG-------
 A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GAGGMCWSCAGWKCAG
GGGAGGACNG--------
 A C G T A C G T A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GAGGMCWSCAGWKCAG
CTAGGCCT---------
 A C G T A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GAGGMCWSCAGWKCAG
TRAGGTCA---------
 A C G T A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-GAGGMCWSCAGWKCAG
GTAGGTCACTGGGTCA-
 A C G T A C T G C G T A A C T G T A C G G T C A A G T C C G A T A T C G A G T C C G T A A C T G C G A T A C G T A G T C C G T A A C T G
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T