Information for 4-GCCACAAAAGCCG (Motif 3)

C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
Reverse Opposite:
G A T C C T A G A C T G A G T C C A G T A C G T A C G T A G C T C T A G A C G T C T A G A T C G A G T C
p-value:1e-34
log p-value:-8.015e+01
Information Content per bp:1.863
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.1 +/- 24.9bp
Average Position of motif in Background17.3 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCCACAAAAGCCG
AAGCCATAAAA----
 A C G T A C G T C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCCACAAAAGCCG
AGAGCCATAAAATTCG
 A C G T A C G T A C G T C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCCACAAAAGCCG
GNCTATAAAAGG--
 A C G T C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCACAAAAGCCG
GTCATAAAAN---
 C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCACAAAAGCCG
GCAATAAAA----
 C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCACAAAAGCCG
NGCAATTAAA----
 A C G T C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCACAAAAGCCG---
-GTATAAAAGGCGGGG
 C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCACAAAAGCCG---
-GTATAAAAGGCGGGG
 C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCACAAAAGCCG
GGTAATAAAAA---
 A C G T C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCACAAAAGCCG
NGYCATAAAWCH--
 A C G T C T A G A T G C A G T C C G T A A G T C C T G A C G T A C G T A G C T A A C T G A G T C A G T C C T A G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T