Information for 18-AGAKSKACTRGAA (Motif 25)

C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A G T C C G T A A C T G A C G T G T A C A T C G T G A C A C G T A G T C A C G T
p-value:1e-9
log p-value:-2.219e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.0 +/- 11.3bp
Average Position of motif in Background28.0 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAKSKACTRGAA---
TAAGCCACTTGAATTT
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

MF0001.1_ETS_class/Jaspar

Match Rank:2
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGAKSKACTRGAA-
------ACCGGAAG
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A G C T G A C C A T G C T A G C T G A G C T A T C A G

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAKSKACTRGAA----
ATAACCACTTGAAAATT
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAKSKACTRGAA---
TAAGCCACTTGAAATT
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAKSKACTRGAA---
TAAGCCACTTGAAATT
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGAKSKACTRGAA-----
---NGNTCTAGAACCNGV
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGAKSKACTRGAA--
-----NACAGGAAAT
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

FLI1/MA0475.2/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AGAKSKACTRGAA---
------ACCGGAAGTG
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G A C T G A C C T A G A C T G T G C A G C T A T C A G A G C T T C A G

PB0090.1_Zbtb12_1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGAKSKACTRGAA------
--NNGATCTAGAACCTNNN
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AGAKSKACTRGAA---
------AATGGAAAAT
 C G T A A C T G C G T A A C T G A T G C A C T G G T C A A G T C A C G T C T A G A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T