Information for 2-AAACCCTATGAAT (Motif 2)

C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
Reverse Opposite:
C T G A A C G T A C G T A T G C C T G A C G A T C G T A C T A G A C T G A C T G A G C T A C G T A C G T
p-value:1e-16
log p-value:-3.876e+01
Information Content per bp:1.862
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.4 +/- 28.1bp
Average Position of motif in Background45.3 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Vdr/MA0693.1/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAACCCTATGAAT--
TGAACTCNATGAACTC
 A C G T C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T A C G T A C G T
G A C T T C A G T G C A T G C A G A T C A G C T A G T C C T G A C T G A G A C T T C A G T G C A T G C A G T A C A G C T A G T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAACCCTATGAAT
TAATCCCN------
 A C G T C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AAACCCTATGAAT------
--NTTNTATGAATGTGNNC
 C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------AAACCCTATGAAT
GANNATTAATCCCTNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A A C G T A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------AAACCCTATGAAT
NTTGTTAATCCCTCTNN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AAACCCTATGAAT
-AACCTTATAT--
 C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AAACCCTATGAAT
-AAACATATGTTT
 C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
A C G T C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

Six3/MA0631.1/Jaspar

Match Rank:8
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------AAACCCTATGAAT
ANANGTGATACCCTATN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C A C G T A C G T A C G T

PH0163.1_Six3/Jaspar

Match Rank:9
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------AAACCCTATGAAT
ANANGTGATACCCTATN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C A C G T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AAACCCTATGAAT
--ACCATATGTT-
 C G T A C G T A C T G A A G T C A G T C A G T C A C G T C G T A A G C T A T C G G T C A C G T A A G C T
A C G T A C G T T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T A C G T