Information for 12-CCAACCTGCTCTGCGG (Motif 18)

A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C T G A C T G
p-value:1e-7
log p-value:-1.681e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 17.9bp
Average Position of motif in Background61.4 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCAACCTGCTCTGCGG
-CCCCCTGCTGTG---
 A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCAACCTGCTCTGCGG
-TNTCCTGCTGTGNNG
 A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAACCTGCTCTGCGG
GGCCYCCTGCTGDGH--
 A C G T A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCAACCTGCTCTGCGG
SNGCACCTGCHS-----
 A C G T A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAACCTGCTCTGCGG
-TCNCCTGCTGNGNNN
 A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAACCTGCTCTGCGG
-NNTCCTGCTGTGNNN
 A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAACCTGCTCTGCGG
-NCACCTGTN------
 A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CCAACCTGCTCTGCGG
ACTATGCCAACCTACC------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CCAACCTGCTCTGCGG
----CCTGCTGAGH--
 A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCAACCTGCTCTGCGG
CCTCACCTG--------
 A C G T A G T C A G T C C G T A C G T A A G T C A G T C A C G T A C T G A G T C A C G T A G T C A C G T A C T G A G T C A C T G A C T G
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T