Information for 4-ACAATGGCAG (Motif 14)

C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
Reverse Opposite:
G T A C C G A T C A T G A G T C A G T C G C T A A G C T A C G T C A T G G A C T
p-value:1e-8
log p-value:-2.046e+01
Information Content per bp:1.682
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif10.88%
Number of Background Sequences with motif1670.2
Percentage of Background Sequences with motif3.40%
Average Position of motif in Targets47.5 +/- 25.2bp
Average Position of motif in Background50.2 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGCAG
AACAAAGG---
 A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGCAG
VRAACAATGG---
 A C G T A C G T A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGCAG
RACAAWGG---
 A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ACAATGGCAG
RAACAATGGN--
 A C G T A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGCAG
GAACAATGGN--
 A C G T A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:ACAATGGCAG--
-TAATGGCGGNC
 C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGCAG
VRRACAAWGG---
 A C G T A C G T A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGCAG
AAAACAATGG---
 A C G T A C G T A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ACAATGGCAG-
CAAGATGGCGGC
 A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGCAG
GAACAATGG---
 A C G T A C G T C T G A G T A C T G C A T C G A C G A T T C A G T C A G G T A C G C T A A C T G
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T