Information for 5-ACTGCAGGGGGCCAAG (Motif 9)

G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G A C T G A G T C A T G C A G T C G A T C G T A C A C G T C T A G A G T C C G T A A C T G A C G T
p-value:1e-10
log p-value:-2.482e+01
Information Content per bp:1.867
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.4 +/- 22.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCAGGGGGCCAAG
DCHCAGCAGGRGGCC---
 A C G T A C G T G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCAGGGGGCCAAG
NCNCAGCGGGGGGTC---
 A C G T A C G T G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACTGCAGGGGGCCAAG
CACAGCGGGGGGTC---
 A C G T G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------ACTGCAGGGGGCCAAG
AATCGCACTGCATTCCG-----
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ACTGCAGGGGGCCAAG---
GCCASCAGGGGGCGCYVNNG
 A C G T G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACTGCAGGGGGCCAAG
NCGCAGCGGGGGGTC---
 A C G T A C G T G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ACTGCAGGGGGCCAAG
CACAGCAGGGGG-----
 A C G T G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ACTGCAGGGGGCCAAG---
--AGCTCGGCGCCAAAAGC
 G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G A C G T A C G T A C G T
A C G T A C G T G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ACTGCAGGGGGCCAAG
-TGGCACCATGCCAA-
 G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:forward strand
Alignment:ACTGCAGGGGGCCAAG
-------CGTGCCAAG
 G T C A A G T C A C G T A C T G A G T C C G T A A C T G C A T G A C T G A T C G A C T G A G T C G T A C C G T A G T C A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G